J3_6B4V_064
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 6B4V|1|EB|A|653, 6B4V|1|EB|C|754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_064 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.1599
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6B4V|1|EB|C|586
6B4V|1|EB|G|587
6B4V|1|EB|G|588
*
6B4V|1|EB|C|651
6B4V|1|EB|U|652
6B4V|1|EB|A|653
6B4V|1|EB|G|654
6B4V|1|EB|A|655
*
6B4V|1|EB|U|751
6B4V|1|EB|G|752
6B4V|1|EB|A|753
6B4V|1|EB|C|754
6B4V|1|EB|G|755
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain BD
- 30S ribosomal protein S15
- Chain DD
- 30S ribosomal protein S17
- Chain UC
- 30S ribosomal protein S8
- Chain YC
- 30S ribosomal protein S12
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