J3_6B4V_069

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6B4V|1|FB|U|504, 6B4V|1|FB|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6B4V_069 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1278

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6B4V|1|FB|G|30
6B4V|1|FB|C|31
*
6B4V|1|FB|G|474
6B4V|1|FB|U|475
6B4V|1|FB|G|476
6B4V|1|FB|A|477
6B4V|1|FB|A|478
6B4V|1|FB|A|479
6B4V|1|FB|A|480
6B4V|1|FB|G|481
6B4V|1|FB|A|482
6B4V|1|FB|A|483
6B4V|1|FB|C|484
*
6B4V|1|FB|G|496
6B4V|1|FB|A|497
6B4V|1|FB|G|498
6B4V|1|FB|U|499
6B4V|1|FB|G|500
6B4V|1|FB|A|501
6B4V|1|FB|A|502
6B4V|1|FB|A|503
6B4V|1|FB|U|504
6B4V|1|FB|A|505
6B4V|1|FB|G|506
6B4V|1|FB|A|507
6B4V|1|FB|G|508
6B4V|1|FB|C|509
6B4V|1|FB|C|510

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain VB

50S ribosomal protein L20

Chain XB

50S ribosomal protein L22

Chain ZB

50S ribosomal protein L24