J3_6B4V_082
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6B4V|1|EB|C|48, 6B4V|1|EB|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_082 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0911
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6B4V|1|EB|G|46
6B4V|1|EB|C|47
6B4V|1|EB|C|48
6B4V|1|EB|U|49
6B4V|1|EB|A|50
6B4V|1|EB|A|51
6B4V|1|EB|G|52
*
6B4V|1|EB|U|359
6B4V|1|EB|A|360
6B4V|1|EB|G|361
6B4V|1|EB|G|362
6B4V|1|EB|A|363
6B4V|1|EB|A|364
6B4V|1|EB|U|365
6B4V|1|EB|C|366
6B4V|1|EB|U|367
*
6B4V|1|EB|A|393
6B4V|1|EB|G|394
6B4V|1|EB|C|395
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S ribosomal protein S16
- Chain YC
- 30S ribosomal protein S12
Coloring options: