J3_6B4V_085
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CCAUAG*CG*UCG
- Length
- 11 nucleotides
- Bulged bases
- 6B4V|1|GB|U|14, 6B4V|1|GB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6B4V_085 not in the Motif Atlas
- Homologous match to J3_9DFE_020
- Geometric discrepancy: 0.1938
- The information below is about J3_9DFE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6B4V|1|GB|C|11
6B4V|1|GB|C|12
6B4V|1|GB|A|13
6B4V|1|GB|U|14
6B4V|1|GB|A|15
6B4V|1|GB|G|16
*
6B4V|1|GB|C|68
6B4V|1|GB|G|69
*
6B4V|1|GB|U|107
6B4V|1|GB|C|108
6B4V|1|GB|G|109
Current chains
- Chain GB
- 5S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L25
- Chain BC
- 50S ribosomal protein L27
- Chain FB
- Large subunit ribosomal RNA; LSU rRNA
- Chain TB
- 50S ribosomal protein L18
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