J3_6BOH_038

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

6BOH|1|GB|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_038 not in the Motif Atlas

Homologous match to J3_7RQB_002

Geometric discrepancy: 0.0795

The information below is about J3_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84625.2

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6BOH|1|GB|A|56
6BOH|1|GB|C|57
*
6BOH|1|GB|G|70
6BOH|1|GB|A|71
6BOH|1|GB|U|72
6BOH|1|GB|A|73
6BOH|1|GB|A|74
6BOH|1|GB|G|75
6BOH|1|GB|C|76
*
6BOH|1|GB|G|110
6BOH|1|GB|A|111
6BOH|1|GB|U|112
6BOH|1|GB|G|113
6BOH|1|GB|U|114

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain EC

50S ribosomal protein L29

Chain JC

50S ribosomal protein L34

Chain ZB

50S ribosomal protein L23