J3_6BOH_043

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_043 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0784

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6BOH|1|GB|C|1298
6BOH|1|GB|G|1299
6BOH|1|GB|U|1300
6BOH|1|GB|A|1301
6BOH|1|GB|A|1302
6BOH|1|GB|G|1303
*
6BOH|1|GB|C|1625
6BOH|1|GB|G|1626
6BOH|1|GB|G|1627
*
6BOH|1|GB|U|1639
6BOH|1|GB|C|1640
6BOH|1|GB|A|1641
6BOH|1|GB|G|1642

Current chains

Chain GB

23S ribosomal RNA

Nearby chains