J3_6BOH_045

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

6BOH|1|GB|A|1384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_045 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1121

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6BOH|1|GB|G|1344
6BOH|1|GB|C|1345
6BOH|1|GB|G|1346
6BOH|1|GB|G|1347
6BOH|1|GB|G|1348
6BOH|1|GB|A|1349
6BOH|1|GB|C|1350
*
6BOH|1|GB|G|1381
6BOH|1|GB|G|1382
6BOH|1|GB|C|1383
6BOH|1|GB|A|1384
6BOH|1|GB|G|1385
*
6BOH|1|GB|C|1402
6BOH|1|GB|C|1403

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain ZB

50S ribosomal protein L23