J3_6BOH_048
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6BOH|1|GB|A|2518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOH_048 not in the Motif Atlas
- Homologous match to J3_9DFE_017
- Geometric discrepancy: 0.0736
- The information below is about J3_9DFE_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.5
- Basepair signature
- cWW-tWH-cHW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6BOH|1|GB|C|2517
6BOH|1|GB|A|2518
6BOH|1|GB|U|2519
6BOH|1|GB|C|2520
*
6BOH|1|GB|G|2545
6BOH|1|GB|U|2546
6BOH|1|GB|U|2547
*
6BOH|1|GB|A|2561
6BOH|1|GB|U|2562
6BOH|1|GB|U|2563
6BOH|1|GB|A|2564
6BOH|1|GB|A|2565
6BOH|1|GB|A|2566
6BOH|1|GB|G|2567
Current chains
- Chain GB
- 23S ribosomal RNA
Nearby chains
- Chain KB
- 50S ribosomal protein L3
- Chain PB
- 50S ribosomal protein L13
- Chain QB
- 50S ribosomal protein L14
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