J3_6BOH_048

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6BOH|1|GB|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_048 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0736

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|GB|C|2517
6BOH|1|GB|A|2518
6BOH|1|GB|U|2519
6BOH|1|GB|C|2520
*
6BOH|1|GB|G|2545
6BOH|1|GB|U|2546
6BOH|1|GB|U|2547
*
6BOH|1|GB|A|2561
6BOH|1|GB|U|2562
6BOH|1|GB|U|2563
6BOH|1|GB|A|2564
6BOH|1|GB|A|2565
6BOH|1|GB|A|2566
6BOH|1|GB|G|2567

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L13

Chain QB

50S ribosomal protein L14