J3_6BOH_058
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6BOH|1|B|U|448, 6BOH|1|B|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOH_058 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0725
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6BOH|1|B|C|32
6BOH|1|B|U|33
6BOH|1|B|C|34
6BOH|1|B|G|35
*
6BOH|1|B|C|445
6BOH|1|B|G|446
6BOH|1|B|A|447
6BOH|1|B|U|448
6BOH|1|B|A|449
6BOH|1|B|G|450
6BOH|1|B|C|451
6BOH|1|B|G|452
6BOH|1|B|C|453
6BOH|1|B|A|454
6BOH|1|B|C|455
6BOH|1|B|C|456
6BOH|1|B|A|457
6BOH|1|B|G|458
6BOH|1|B|U|459
6BOH|1|B|A|460
6BOH|1|B|C|461
*
6BOH|1|B|G|468
6BOH|1|B|G|469
6BOH|1|B|A|470
6BOH|1|B|A|471
6BOH|1|B|A|472
6BOH|1|B|G|473
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain EA
- 50S ribosomal protein L34
- Chain G
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L23
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