J3_6BOH_064
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6BOH|1|FB|C|48, 6BOH|1|FB|A|50, 6BOH|1|FB|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOH_064 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0803
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6BOH|1|FB|G|46
6BOH|1|FB|C|47
6BOH|1|FB|C|48
6BOH|1|FB|U|49
6BOH|1|FB|A|50
6BOH|1|FB|A|51
6BOH|1|FB|G|52
*
6BOH|1|FB|U|359
6BOH|1|FB|A|360
6BOH|1|FB|G|361
6BOH|1|FB|G|362
6BOH|1|FB|A|363
6BOH|1|FB|A|364
6BOH|1|FB|U|365
6BOH|1|FB|C|366
6BOH|1|FB|U|367
*
6BOH|1|FB|A|393
6BOH|1|FB|G|394
6BOH|1|FB|C|395
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal protein S12
- Chain ED
- 30S ribosomal protein S16
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