J3_6BOH_064

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6BOH|1|FB|C|48, 6BOH|1|FB|A|50, 6BOH|1|FB|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_064 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0803

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6BOH|1|FB|G|46
6BOH|1|FB|C|47
6BOH|1|FB|C|48
6BOH|1|FB|U|49
6BOH|1|FB|A|50
6BOH|1|FB|A|51
6BOH|1|FB|G|52
*
6BOH|1|FB|U|359
6BOH|1|FB|A|360
6BOH|1|FB|G|361
6BOH|1|FB|G|362
6BOH|1|FB|A|363
6BOH|1|FB|A|364
6BOH|1|FB|U|365
6BOH|1|FB|C|366
6BOH|1|FB|U|367
*
6BOH|1|FB|A|393
6BOH|1|FB|G|394
6BOH|1|FB|C|395

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S12

Chain ED

30S ribosomal protein S16