J3_6BOH_072

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6BOH|1|GB|U|271|||D

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_072 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1359

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6BOH|1|GB|U|269
6BOH|1|GB|A|270|||A
6BOH|1|GB|A|270|||B
6BOH|1|GB|A|270|||C
6BOH|1|GB|C|270|||D
*
6BOH|1|GB|G|270|||X
6BOH|1|GB|G|270|||Y
6BOH|1|GB|G|270|||Z
6BOH|1|GB|U|271|||A
6BOH|1|GB|C|271|||B
6BOH|1|GB|G|271|||C
6BOH|1|GB|U|271|||D
6BOH|1|GB|G|271
*
6BOH|1|GB|C|366
6BOH|1|GB|G|370

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain OB

50S ribosomal protein L9