J3_6BOH_074

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_074 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0818

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|GB|G|1424
6BOH|1|GB|G|1425
6BOH|1|GB|G|1426
6BOH|1|GB|A|1427
6BOH|1|GB|C|1428
6BOH|1|GB|G|1429
*
6BOH|1|GB|C|1564
6BOH|1|GB|C|1565
*
6BOH|1|GB|G|1568
6BOH|1|GB|A|1569
6BOH|1|GB|A|1570
6BOH|1|GB|A|1571
6BOH|1|GB|A|1572
6BOH|1|GB|G|1573
6BOH|1|GB|C|1574

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2