3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6BOH_074 not in the Motif Atlas
Homologous match to J3_9DFE_013
Geometric discrepancy: 0.0818
The information below is about J3_9DFE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6BOH|1|GB|G|1424
6BOH|1|GB|G|1425
6BOH|1|GB|G|1426
6BOH|1|GB|A|1427
6BOH|1|GB|C|1428
6BOH|1|GB|G|1429
*
6BOH|1|GB|C|1564
6BOH|1|GB|C|1565
*
6BOH|1|GB|G|1568
6BOH|1|GB|A|1569
6BOH|1|GB|A|1570
6BOH|1|GB|A|1571
6BOH|1|GB|A|1572
6BOH|1|GB|G|1573
6BOH|1|GB|C|1574

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain JB
50S ribosomal protein L2

Coloring options:


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