J3_6BOH_085

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BOH_085 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1489

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6BOH|1|FB|U|1073
6BOH|1|FB|G|1074
*
6BOH|1|FB|U|1083
6BOH|1|FB|G|1084
6BOH|1|FB|U|1085
6BOH|1|FB|U|1086
*
6BOH|1|FB|G|1099
6BOH|1|FB|C|1100
6BOH|1|FB|A|1101
6BOH|1|FB|A|1102

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S2

Chain TC

30S ribosomal protein S5