J3_6BOK_012
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 6BOK|1|A|U|1240
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOK_012 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1456
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
6BOK|1|A|C|1237
6BOK|1|A|A|1238
6BOK|1|A|A|1239
6BOK|1|A|U|1240
6BOK|1|A|G|1241
*
6BOK|1|A|C|1296
6BOK|1|A|C|1297
6BOK|1|A|C|1298
6BOK|1|A|A|1299
6BOK|1|A|G|1300
6BOK|1|A|U|1301
6BOK|1|A|U|1302
6BOK|1|A|C|1303
*
6BOK|1|A|G|1334
6BOK|1|A|C|1335
6BOK|1|A|C|1336
6BOK|1|A|G|1337
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain CB
- 30S ribosomal protein Thx
- Chain D
- Small subunit ribosomal RNA fragment; SSU rRNA fragment
- Chain OA
- 30S ribosomal protein S7
- Chain UA
- 30S ribosomal protein S13
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