J3_6BOK_062
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 6BOK|1|EB|U|504, 6BOK|1|EB|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6BOK_062 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1291
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6BOK|1|EB|G|30
6BOK|1|EB|C|31
*
6BOK|1|EB|G|474
6BOK|1|EB|U|475
6BOK|1|EB|G|476
6BOK|1|EB|A|477
6BOK|1|EB|A|478
6BOK|1|EB|A|479
6BOK|1|EB|A|480
6BOK|1|EB|G|481
6BOK|1|EB|A|482
6BOK|1|EB|A|483
6BOK|1|EB|C|484
*
6BOK|1|EB|G|496
6BOK|1|EB|A|497
6BOK|1|EB|G|498
6BOK|1|EB|U|499
6BOK|1|EB|G|500
6BOK|1|EB|A|501
6BOK|1|EB|A|502
6BOK|1|EB|A|503
6BOK|1|EB|U|504
6BOK|1|EB|A|505
6BOK|1|EB|G|506
6BOK|1|EB|A|507
6BOK|1|EB|G|508
6BOK|1|EB|C|509
6BOK|1|EB|C|510
Current chains
- Chain EB
- 23S ribosomal RNA
Nearby chains
- Chain UB
- 50S ribosomal protein L20
- Chain WB
- 50S ribosomal protein L22
- Chain YB
- 50S ribosomal protein L24
Coloring options: