J3_6BU8_018

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6BU8|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BU8_018 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1293

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6BU8|1|A|C|826
6BU8|1|A|U|827
6BU8|1|A|U|828
6BU8|1|A|G|829
*
6BU8|1|A|C|857
6BU8|1|A|G|858
6BU8|1|A|G|859
6BU8|1|A|A|860
6BU8|1|A|G|861
*
6BU8|1|A|C|868
6BU8|1|A|G|869
6BU8|1|A|U|870
6BU8|1|A|U|871
6BU8|1|A|A|872
6BU8|1|A|A|873
6BU8|1|A|G|874

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain H

30S ribosomal protein S8

Chain U

30S ribosomal protein S21