J3_6BU8_030

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BU8_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1056

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6BU8|1|01|G|1424
6BU8|1|01|G|1425
6BU8|1|01|G|1426
6BU8|1|01|A|1427
6BU8|1|01|C|1428
6BU8|1|01|G|1429
*
6BU8|1|01|C|1564
6BU8|1|01|C|1565
*
6BU8|1|01|G|1568
6BU8|1|01|A|1569
6BU8|1|01|A|1570
6BU8|1|01|A|1571
6BU8|1|01|A|1572
6BU8|1|01|G|1573
6BU8|1|01|C|1574

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2