J3_6BU8_036

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6BU8|1|A|U|1212, 6BU8|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BU8_036 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1812

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6BU8|1|A|C|990
6BU8|1|A|U|991
6BU8|1|A|U|992
6BU8|1|A|G|993
6BU8|1|A|A|994
6BU8|1|A|C|995
6BU8|1|A|A|996
6BU8|1|A|U|997
*
6BU8|1|A|A|1044
6BU8|1|A|C|1045
6BU8|1|A|A|1046
6BU8|1|A|G|1047
*
6BU8|1|A|C|1210
6BU8|1|A|U|1211
6BU8|1|A|U|1212
6BU8|1|A|A|1213
6BU8|1|A|C|1214
6BU8|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14