J3_6BUW_007

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_007 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1783

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6BUW|1|QA|C|990
6BUW|1|QA|U|991
6BUW|1|QA|U|992
6BUW|1|QA|G|993
6BUW|1|QA|A|994
6BUW|1|QA|C|995
6BUW|1|QA|A|996
6BUW|1|QA|U|997
*
6BUW|1|QA|A|1044
6BUW|1|QA|C|1045
6BUW|1|QA|A|1046
6BUW|1|QA|G|1047
*
6BUW|1|QA|C|1210
6BUW|1|QA|U|1211
6BUW|1|QA|U|1212
6BUW|1|QA|A|1213
6BUW|1|QA|C|1214
6BUW|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain YA

Large subunit ribosomal RNA; LSU rRNA