J3_6BUW_031

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6BUW|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BUW_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1765

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

6BUW|1|XA|C|826
6BUW|1|XA|U|827
6BUW|1|XA|A|828
6BUW|1|XA|G|829
*
6BUW|1|XA|C|857
6BUW|1|XA|G|858
6BUW|1|XA|A|859
6BUW|1|XA|A|860
6BUW|1|XA|G|861
*
6BUW|1|XA|C|868
6BUW|1|XA|G|869
6BUW|1|XA|U|870
6BUW|1|XA|U|871
6BUW|1|XA|A|872
6BUW|1|XA|A|873
6BUW|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8