J3_6BY1_018

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_018 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.2105

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6BY1|1|BA|C|936
6BY1|1|BA|A|937
6BY1|1|BA|A|938
6BY1|1|BA|G|939
*
6BY1|1|BA|C|1344
6BY1|1|BA|U|1345
6BY1|1|BA|A|1346
6BY1|1|BA|G|1347
6BY1|1|BA|U|1348
6BY1|1|BA|A|1349
6BY1|1|BA|A|1350
*
6BY1|1|BA|U|1372
6BY1|1|BA|G|1373
6BY1|1|BA|A|1374
6BY1|1|BA|A|1375
6BY1|1|BA|U|1376
6BY1|1|BA|A|1377
6BY1|1|BA|C|1378
6BY1|1|BA|G|1379

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9