J3_6BY1_030

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_030 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.26

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|G|1055
6BY1|1|CA|G|1056
6BY1|1|CA|A|1057
*
6BY1|1|CA|U|1081
6BY1|1|CA|U|1082
6BY1|1|CA|U|1083
6BY1|1|CA|A|1084
6BY1|1|CA|A|1085
6BY1|1|CA|A|1086
6BY1|1|CA|G|1087
*
6BY1|1|CA|C|1102
6BY1|1|CA|A|1103
6BY1|1|CA|C|1104

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L10

Chain C6

50S ribosomal protein L36

Chain CI

50S ribosomal protein L11