J3_6BY1_035

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BY1_035 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1577

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6BY1|1|CA|C|2091
6BY1|1|CA|U|2092
6BY1|1|CA|G|2093
*
6BY1|1|CA|C|2196
6BY1|1|CA|U|2197
6BY1|1|CA|A|2198
6BY1|1|CA|A|2199
6BY1|1|CA|C|2200
*
6BY1|1|CA|G|2223
6BY1|1|CA|G|2224
6BY1|1|CA|A|2225
6BY1|1|CA|C|2226
6BY1|1|CA|A|2227
6BY1|1|CA|G|2228

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L2

Chain CH

50S ribosomal protein L9

Chain CX

50S ribosomal protein L28