J3_6BZ6_031

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6BZ6|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6BZ6_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1917

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

6BZ6|1|XA|C|826
6BZ6|1|XA|U|827
6BZ6|1|XA|A|828
6BZ6|1|XA|G|829
*
6BZ6|1|XA|C|857
6BZ6|1|XA|G|858
6BZ6|1|XA|A|859
6BZ6|1|XA|A|860
6BZ6|1|XA|G|861
*
6BZ6|1|XA|C|868
6BZ6|1|XA|G|869
6BZ6|1|XA|U|870
6BZ6|1|XA|U|871
6BZ6|1|XA|A|872
6BZ6|1|XA|A|873
6BZ6|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8