3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
CC*GUGGAU*AAUCG
Length
13 nucleotides
Bulged bases
6BZ6|1|YA|G|2833
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6BZ6_054 not in the Motif Atlas
Homologous match to J3_9DFE_019
Geometric discrepancy: 0.1548
The information below is about J3_9DFE_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76911.2
Basepair signature
cWW-tHS-F-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6BZ6|1|YA|C|2814
6BZ6|1|YA|C|2815
*
6BZ6|1|YA|G|2831
6BZ6|1|YA|U|2832
6BZ6|1|YA|G|2833
6BZ6|1|YA|G|2834
6BZ6|1|YA|A|2835
6BZ6|1|YA|U|2836
*
6BZ6|1|YA|A|2882
6BZ6|1|YA|A|2883
6BZ6|1|YA|U|2884
6BZ6|1|YA|C|2885
6BZ6|1|YA|G|2886

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y5
50S ribosomal protein L32
Chain YE
50S ribosomal protein L3
Chain YR
50S ribosomal protein L17
Chain YT
50S ribosomal protein L19

Coloring options:


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