3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
6BZ6|1|RA|U|504, 6BZ6|1|RA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6BZ6_060 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.1508
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6BZ6|1|RA|G|30
6BZ6|1|RA|C|31
*
6BZ6|1|RA|G|474
6BZ6|1|RA|U|475
6BZ6|1|RA|G|476
6BZ6|1|RA|A|477
6BZ6|1|RA|A|478
6BZ6|1|RA|A|479
6BZ6|1|RA|A|480
6BZ6|1|RA|G|481
6BZ6|1|RA|A|482
6BZ6|1|RA|A|483
6BZ6|1|RA|C|484
*
6BZ6|1|RA|G|496
6BZ6|1|RA|A|497
6BZ6|1|RA|G|498
6BZ6|1|RA|U|499
6BZ6|1|RA|G|500
6BZ6|1|RA|A|501
6BZ6|1|RA|A|502
6BZ6|1|RA|A|503
6BZ6|1|RA|U|504
6BZ6|1|RA|A|505
6BZ6|1|RA|G|506
6BZ6|1|RA|A|507
6BZ6|1|RA|G|508
6BZ6|1|RA|C|509
6BZ6|1|RA|C|510

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22
Chain RX
50S ribosomal protein L23
Chain RY
50S ribosomal protein L24

Coloring options:


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