3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6BZ6|1|RA|C|34, 6BZ6|1|RA|U|448, 6BZ6|1|RA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6BZ6_061 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.1121
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6BZ6|1|RA|C|32
6BZ6|1|RA|U|33
6BZ6|1|RA|C|34
6BZ6|1|RA|G|35
*
6BZ6|1|RA|C|445
6BZ6|1|RA|G|446
6BZ6|1|RA|A|447
6BZ6|1|RA|U|448
6BZ6|1|RA|A|449
6BZ6|1|RA|G|450
6BZ6|1|RA|C|451
6BZ6|1|RA|G|452
6BZ6|1|RA|C|453
6BZ6|1|RA|A|454
6BZ6|1|RA|C|455
6BZ6|1|RA|C|456
6BZ6|1|RA|A|457
6BZ6|1|RA|G|458
6BZ6|1|RA|U|459
6BZ6|1|RA|A|460
6BZ6|1|RA|C|461
*
6BZ6|1|RA|G|468
6BZ6|1|RA|G|469
6BZ6|1|RA|A|470
6BZ6|1|RA|A|471
6BZ6|1|RA|A|472
6BZ6|1|RA|G|473

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34
Chain RF
50S ribosomal protein L4
Chain RU
50S ribosomal protein L20
Chain RX
50S ribosomal protein L23

Coloring options:


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