J3_6C0F_011

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

6C0F|1|2|U|60, 6C0F|1|2|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C0F_011 not in the Motif Atlas

Homologous match to J3_8P4V_024

Geometric discrepancy: 0.0875

The information below is about J3_8P4V_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

6C0F|1|2|A|44
6C0F|1|2|C|45
*
6C0F|1|2|G|58
6C0F|1|2|A|59
6C0F|1|2|U|60
6C0F|1|2|A|61
6C0F|1|2|C|62
6C0F|1|2|G|63
6C0F|1|2|U|64
*
6C0F|1|2|A|96
6C0F|1|2|A|97
6C0F|1|2|U|98
6C0F|1|2|C|99
6C0F|1|2|U|100

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 7

Nucleolar protein 16

Chain h

60S ribosomal protein L35-A

Chain j

60S ribosomal protein L37-A