J3_6C4I_027
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6C4I|1|A|A|504, 6C4I|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C4I_027 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1103
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6C4I|1|A|G|30
6C4I|1|A|C|31
*
6C4I|1|A|G|474
6C4I|1|A|C|475
6C4I|1|A|G|476
6C4I|1|A|A|477
6C4I|1|A|A|478
6C4I|1|A|A|479
6C4I|1|A|A|480
6C4I|1|A|G|481
6C4I|1|A|A|482
6C4I|1|A|A|483
6C4I|1|A|C|484
*
6C4I|1|A|G|496
6C4I|1|A|A|497
6C4I|1|A|G|498
6C4I|1|A|U|499
6C4I|1|A|G|500
6C4I|1|A|A|501
6C4I|1|A|A|502
6C4I|1|A|A|503
6C4I|1|A|A|504
6C4I|1|A|A|505
6C4I|1|A|G|506
6C4I|1|A|A|507
6C4I|1|A|A|508
6C4I|1|A|C|509
6C4I|1|A|C|510
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
Coloring options: