J3_6C5L_004

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6C5L|1|AA|U|871, 6C5L|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6C5L_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1173

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02285.1

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

2

Unit IDs

6C5L|1|AA|C|826
6C5L|1|AA|U|827
6C5L|1|AA|A|828
6C5L|1|AA|G|829
*
6C5L|1|AA|C|857
6C5L|1|AA|G|858
6C5L|1|AA|A|859
6C5L|1|AA|A|860
6C5L|1|AA|G|861
*
6C5L|1|AA|C|868
6C5L|1|AA|G|869
6C5L|1|AA|U|870
6C5L|1|AA|U|871
6C5L|1|AA|A|872
6C5L|1|AA|A|873
6C5L|1|AA|G|874

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AB

30S ribosomal protein S2

Chain AH

30S ribosomal protein S8