J3_6C5L_050
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 6C5L|1|DA|G|2833
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6C5L_050 not in the Motif Atlas
- Homologous match to J3_9DFE_019
- Geometric discrepancy: 0.1966
- The information below is about J3_9DFE_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6C5L|1|DA|C|2814
6C5L|1|DA|C|2815
*
6C5L|1|DA|G|2831
6C5L|1|DA|U|2832
6C5L|1|DA|G|2833
6C5L|1|DA|G|2834
6C5L|1|DA|A|2835
6C5L|1|DA|U|2836
*
6C5L|1|DA|A|2882
6C5L|1|DA|A|2883
6C5L|1|DA|U|2884
6C5L|1|DA|C|2885
6C5L|1|DA|G|2886
Current chains
- Chain DA
- 23S rRNA
Nearby chains
- Chain D5
- 50S ribosomal protein L32
- Chain DE
- 50S ribosomal protein L3
- Chain DR
- 50S ribosomal protein L17
- Chain DT
- 50S ribosomal protein L19
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