3D structure

PDB id
6CAE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
6CAE|1|1a|U|871
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CAE_019 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0566
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

6CAE|1|1a|C|826
6CAE|1|1a|U|827
6CAE|1|1a|A|828
6CAE|1|1a|G|829
*
6CAE|1|1a|C|857
6CAE|1|1a|G|858
6CAE|1|1a|A|859
6CAE|1|1a|A|860
6CAE|1|1a|G|861
*
6CAE|1|1a|C|868
6CAE|1|1a|G|869
6CAE|1|1a|U|870
6CAE|1|1a|U|871
6CAE|1|1a|A|872
6CAE|1|1a|A|873
6CAE|1|1a|G|874

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1b
30S ribosomal protein S2
Chain 1h
30S ribosomal protein S8

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.391 s