J3_6CAE_067

3D structure

PDB id

6CAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with NOSO-95179 antibiotic and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6CAE|1|2A|C|34, 6CAE|1|2A|U|448, 6CAE|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAE_067 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0654

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

6CAE|1|2A|C|32
6CAE|1|2A|U|33
6CAE|1|2A|C|34
6CAE|1|2A|G|35
*
6CAE|1|2A|C|445
6CAE|1|2A|G|446
6CAE|1|2A|A|447
6CAE|1|2A|U|448
6CAE|1|2A|A|449
6CAE|1|2A|G|450
6CAE|1|2A|C|451
6CAE|1|2A|G|452
6CAE|1|2A|C|453
6CAE|1|2A|A|454
6CAE|1|2A|C|455
6CAE|1|2A|C|456
6CAE|1|2A|A|457
6CAE|1|2A|G|458
6CAE|1|2A|U|459
6CAE|1|2A|A|460
6CAE|1|2A|C|461
*
6CAE|1|2A|G|468
6CAE|1|2A|G|469
6CAE|1|2A|A|470
6CAE|1|2A|A|471
6CAE|1|2A|A|472
6CAE|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23