J3_6CAO_016

3D structure

PDB id

6CAO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosomal decoding complex at ambient temperature

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6CAO|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAO_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1194

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6CAO|1|A|C|990
6CAO|1|A|U|991
6CAO|1|A|U|992
6CAO|1|A|G|993
6CAO|1|A|A|994
6CAO|1|A|C|995
6CAO|1|A|A|996
6CAO|1|A|U|997
*
6CAO|1|A|A|1044
6CAO|1|A|C|1045
6CAO|1|A|A|1046
6CAO|1|A|G|1047
*
6CAO|1|A|C|1210
6CAO|1|A|U|1211
6CAO|1|A|U|1212
6CAO|1|A|A|1213
6CAO|1|A|C|1214
6CAO|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z