J3_6CAP_015

3D structure

PDB id

6CAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6CAP|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAP_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2039

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6CAP|1|A|C|990
6CAP|1|A|U|991
6CAP|1|A|U|992
6CAP|1|A|G|993
6CAP|1|A|A|994
6CAP|1|A|C|995
6CAP|1|A|A|996
6CAP|1|A|U|997
*
6CAP|1|A|A|1044
6CAP|1|A|C|1045
6CAP|1|A|A|1046
6CAP|1|A|G|1047
*
6CAP|1|A|C|1210
6CAP|1|A|U|1211
6CAP|1|A|U|1212
6CAP|1|A|A|1213
6CAP|1|A|C|1214
6CAP|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z