J3_6CAR_015

3D structure

PDB id

6CAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6CAR|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAR_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1925

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6CAR|1|A|C|990
6CAR|1|A|U|991
6CAR|1|A|U|992
6CAR|1|A|G|993
6CAR|1|A|A|994
6CAR|1|A|C|995
6CAR|1|A|A|996
6CAR|1|A|U|997
*
6CAR|1|A|A|1044
6CAR|1|A|C|1045
6CAR|1|A|A|1046
6CAR|1|A|G|1047
*
6CAR|1|A|C|1210
6CAR|1|A|U|1211
6CAR|1|A|U|1212
6CAR|1|A|A|1213
6CAR|1|A|C|1214
6CAR|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z