J3_6CAS_015

3D structure

PDB id

6CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6CAS|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CAS_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1915

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6CAS|1|A|C|990
6CAS|1|A|U|991
6CAS|1|A|U|992
6CAS|1|A|G|993
6CAS|1|A|A|994
6CAS|1|A|C|995
6CAS|1|A|A|996
6CAS|1|A|U|997
*
6CAS|1|A|A|1044
6CAS|1|A|C|1045
6CAS|1|A|A|1046
6CAS|1|A|G|1047
*
6CAS|1|A|C|1210
6CAS|1|A|U|1211
6CAS|1|A|U|1212
6CAS|1|A|A|1213
6CAS|1|A|C|1214
6CAS|1|A|G|1215

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z