J3_6CB1_001
3D structure
- PDB id
- 6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6CB1|1|1|U|117, 6CB1|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6CB1_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.2627
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6CB1|1|1|C|113
6CB1|1|1|A|114
6CB1|1|1|A|115
6CB1|1|1|A|116
6CB1|1|1|U|117
6CB1|1|1|U|118
6CB1|1|1|U|119
6CB1|1|1|G|120
6CB1|1|1|A|121
6CB1|1|1|A|122
6CB1|1|1|A|123
*
6CB1|1|1|U|149
6CB1|1|1|A|150
6CB1|1|1|A|151
6CB1|1|1|U|152
6CB1|1|1|U|153
6CB1|1|1|U|154
6CB1|1|1|G|155
6CB1|1|1|G|156
6CB1|1|1|A|157
6CB1|1|1|G|158
*
6CB1|1|1|C|263
6CB1|1|1|G|264
6CB1|1|1|A|265
6CB1|1|1|A|266
6CB1|1|1|G|267
Current chains
- Chain 1
- 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain 7
- Nucleolar protein 16
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
- Chain p
- ATP-dependent RNA helicase HAS1
- Chain s
- Ribosome biogenesis protein ERB1
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