3D structure

PDB id
6CB1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.6 Å

Loop

Sequence
CAAAUUUGAAA*UAAUUUGGAG*CGAAG
Length
26 nucleotides
Bulged bases
6CB1|1|1|U|117, 6CB1|1|1|G|156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CB1_001 not in the Motif Atlas
Homologous match to J3_8P9A_042
Geometric discrepancy: 0.2627
The information below is about J3_8P9A_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_19664.1
Basepair signature
cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

6CB1|1|1|C|113
6CB1|1|1|A|114
6CB1|1|1|A|115
6CB1|1|1|A|116
6CB1|1|1|U|117
6CB1|1|1|U|118
6CB1|1|1|U|119
6CB1|1|1|G|120
6CB1|1|1|A|121
6CB1|1|1|A|122
6CB1|1|1|A|123
*
6CB1|1|1|U|149
6CB1|1|1|A|150
6CB1|1|1|A|151
6CB1|1|1|U|152
6CB1|1|1|U|153
6CB1|1|1|U|154
6CB1|1|1|G|155
6CB1|1|1|G|156
6CB1|1|1|A|157
6CB1|1|1|G|158
*
6CB1|1|1|C|263
6CB1|1|1|G|264
6CB1|1|1|A|265
6CB1|1|1|A|266
6CB1|1|1|G|267

Current chains

Chain 1
35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 7
Nucleolar protein 16
Chain G
60S ribosomal protein L8-A
Chain L
60S ribosomal protein L13-A
Chain N
60S ribosomal protein L15-A
Chain h
60S ribosomal protein L35-A
Chain i
60S ribosomal protein L36-A
Chain p
ATP-dependent RNA helicase HAS1
Chain s
Ribosome biogenesis protein ERB1

Coloring options:


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