J3_6CB1_013

3D structure

PDB id

6CB1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CB1_013 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0846

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6CB1|1|1|A|1654
6CB1|1|1|G|1655
6CB1|1|1|A|1656
6CB1|1|1|C|1657
6CB1|1|1|G|1658
*
6CB1|1|1|C|1791
6CB1|1|1|C|1792
*
6CB1|1|1|G|1796
6CB1|1|1|A|1797
6CB1|1|1|A|1798
6CB1|1|1|A|1799
6CB1|1|1|A|1800
6CB1|1|1|U|1801

Current chains

Chain 1

35S pre-ribosomal RNA miscRNA

Nearby chains

Chain g

60S ribosomal protein L34-A