J3_6CFJ_066

3D structure

PDB id

6CFJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6CFJ|1|2A|U|504, 6CFJ|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFJ_066 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0629

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6CFJ|1|2A|G|30
6CFJ|1|2A|C|31
*
6CFJ|1|2A|G|474
6CFJ|1|2A|U|475
6CFJ|1|2A|G|476
6CFJ|1|2A|A|477
6CFJ|1|2A|A|478
6CFJ|1|2A|A|479
6CFJ|1|2A|A|480
6CFJ|1|2A|G|481
6CFJ|1|2A|A|482
6CFJ|1|2A|A|483
6CFJ|1|2A|C|484
*
6CFJ|1|2A|G|496
6CFJ|1|2A|A|497
6CFJ|1|2A|G|498
6CFJ|1|2A|U|499
6CFJ|1|2A|G|500
6CFJ|1|2A|A|501
6CFJ|1|2A|A|502
6CFJ|1|2A|A|503
6CFJ|1|2A|U|504
6CFJ|1|2A|A|505
6CFJ|1|2A|G|506
6CFJ|1|2A|A|507
6CFJ|1|2A|G|508
6CFJ|1|2A|C|509
6CFJ|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24