3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
6CFK|1|1a|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CFK_027 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0966
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6CFK|1|1a|C|1237
6CFK|1|1a|A|1238
6CFK|1|1a|A|1239
6CFK|1|1a|U|1240
6CFK|1|1a|G|1241
*
6CFK|1|1a|C|1296
6CFK|1|1a|C|1297
6CFK|1|1a|C|1298
6CFK|1|1a|A|1299
6CFK|1|1a|G|1300
6CFK|1|1a|U|1301
6CFK|1|1a|U|1302
6CFK|1|1a|C|1303
*
6CFK|1|1a|G|1334
6CFK|1|1a|C|1335
6CFK|1|1a|C|1336
6CFK|1|1a|G|1337

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1g
30S ribosomal protein S7
Chain 1m
30S ribosomal protein S13
Chain 1u
30S ribosomal protein Thx

Coloring options:


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