J3_6CFK_046

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6CFK|1|2a|U|871, 6CFK|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_046 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0646

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6CFK|1|2a|C|826
6CFK|1|2a|U|827
6CFK|1|2a|A|828
6CFK|1|2a|G|829
*
6CFK|1|2a|C|857
6CFK|1|2a|G|858
6CFK|1|2a|A|859
6CFK|1|2a|A|860
6CFK|1|2a|G|861
*
6CFK|1|2a|C|868
6CFK|1|2a|G|869
6CFK|1|2a|U|870
6CFK|1|2a|U|871
6CFK|1|2a|A|872
6CFK|1|2a|A|873
6CFK|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8