3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
6CFK|1|1A|U|529, 6CFK|1|1A|G|533
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6CFK_055 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0437
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6CFK|1|1A|G|30
6CFK|1|1A|C|31
*
6CFK|1|1A|G|500
6CFK|1|1A|U|501
6CFK|1|1A|G|502
6CFK|1|1A|A|503
6CFK|1|1A|A|504
6CFK|1|1A|A|505
6CFK|1|1A|A|506
6CFK|1|1A|G|507
6CFK|1|1A|A|508
6CFK|1|1A|A|509
6CFK|1|1A|C|510
*
6CFK|1|1A|G|521
6CFK|1|1A|A|522
6CFK|1|1A|G|523
6CFK|1|1A|U|524
6CFK|1|1A|G|525
6CFK|1|1A|A|526
6CFK|1|1A|A|527
6CFK|1|1A|A|528
6CFK|1|1A|U|529
6CFK|1|1A|A|530
6CFK|1|1A|G|531
6CFK|1|1A|A|532
6CFK|1|1A|G|533
6CFK|1|1A|C|534
6CFK|1|1A|C|535

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 1U
50S ribosomal protein L20
Chain 1W
50S ribosomal protein L22
Chain 1Y
50S ribosomal protein L24

Coloring options:


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