J3_6CFK_065

3D structure

PDB id

6CFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6CFK|1|2A|U|504, 6CFK|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CFK_065 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0583

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6CFK|1|2A|G|30
6CFK|1|2A|C|31
*
6CFK|1|2A|G|474
6CFK|1|2A|U|475
6CFK|1|2A|G|476
6CFK|1|2A|A|477
6CFK|1|2A|A|478
6CFK|1|2A|A|479
6CFK|1|2A|A|480
6CFK|1|2A|G|481
6CFK|1|2A|A|482
6CFK|1|2A|A|483
6CFK|1|2A|C|484
*
6CFK|1|2A|G|496
6CFK|1|2A|A|497
6CFK|1|2A|G|498
6CFK|1|2A|U|499
6CFK|1|2A|G|500
6CFK|1|2A|A|501
6CFK|1|2A|A|502
6CFK|1|2A|A|503
6CFK|1|2A|U|504
6CFK|1|2A|A|505
6CFK|1|2A|G|506
6CFK|1|2A|A|507
6CFK|1|2A|G|508
6CFK|1|2A|C|509
6CFK|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24