J3_6CZR_081

3D structure

PDB id

6CZR (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of amicetin bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.14 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

6CZR|1|2A|G|2842, 6CZR|1|2A|A|2844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6CZR_081 not in the Motif Atlas

Homologous match to J3_4WF9_021

Geometric discrepancy: 0.1821

The information below is about J3_4WF9_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6CZR|1|2A|C|2823
6CZR|1|2A|C|2824
*
6CZR|1|2A|G|2840
6CZR|1|2A|U|2841
6CZR|1|2A|G|2842
6CZR|1|2A|G|2843
6CZR|1|2A|A|2844
6CZR|1|2A|U|2845
*
6CZR|1|2A|A|2891
6CZR|1|2A|A|2892
6CZR|1|2A|U|2893
6CZR|1|2A|C|2894
6CZR|1|2A|G|2895

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2R

50S ribosomal protein L17