J3_6D8O_002
3D structure
- PDB id
- 6D8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Group I self-splicing intron P4-P6 domain mutant A230U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CAAG*UGGC*GGUAUG
- Length
- 14 nucleotides
- Bulged bases
- 6D8O|1|B|U|179
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D8O_002 not in the Motif Atlas
- Geometric match to J3_1GID_002
- Geometric discrepancy: 0.0596
- The information below is about J3_1GID_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23680.1
- Basepair signature
- cWW-F-tHS-F-tHS-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6D8O|1|B|C|138
6D8O|1|B|A|139
6D8O|1|B|A|140
6D8O|1|B|G|141
*
6D8O|1|B|U|162
6D8O|1|B|G|163
6D8O|1|B|G|164
6D8O|1|B|C|165
*
6D8O|1|B|G|175
6D8O|1|B|G|176
6D8O|1|B|U|177
6D8O|1|B|A|178
6D8O|1|B|U|179
6D8O|1|B|G|180
Current chains
- Chain B
- Group I self-splicing intron
Nearby chains
- Chain A
- Group I self-splicing intron
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