J3_6D90_009
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D90_009 not in the Motif Atlas
- Geometric match to J3_8C3A_042
- Geometric discrepancy: 0.3425
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6D90|1|2|U|1339
6D90|1|2|U|1340
6D90|1|2|C|1341
6D90|1|2|U|1342
6D90|1|2|U|1343
6D90|1|2|A|1344
6D90|1|2|G|1345
*
6D90|1|2|C|1384
6D90|1|2|G|1385
6D90|1|2|A|1386
6D90|1|2|G|1387
6D90|1|2|A|1388
6D90|1|2|C|1389
*
6D90|1|2|G|1481
6D90|1|2|C|1482
6D90|1|2|A|1483
6D90|1|2|A|1484
6D90|1|2|U|1485
6D90|1|2|A|1486
6D90|1|2|A|1487
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain DD
- uS5
- Chain EE
- uS3
- Chain RR
- uS9
- Chain SS
- eS17
- Chain VV
- uS10
- Chain ee
- eS29
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