J3_6D90_016
3D structure
- PDB id
- 6D90 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 6D90|1|5|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6D90_016 not in the Motif Atlas
- Homologous match to J3_5TBW_005
- Geometric discrepancy: 0.1893
- The information below is about J3_5TBW_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_33851.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6D90|1|5|G|1545
6D90|1|5|C|1546
6D90|1|5|A|1547
6D90|1|5|G|1548
*
6D90|1|5|C|1580
6D90|1|5|G|1581
6D90|1|5|U|1582
6D90|1|5|A|1583
6D90|1|5|G|1584
*
6D90|1|5|U|1609
6D90|1|5|C|1610
6D90|1|5|C|1611
6D90|1|5|G|1612
6D90|1|5|A|1613
6D90|1|5|C|1614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain R
- eL19
- Chain g
- eL34
- Chain p
- eL43
Coloring options: