J3_6D90_021

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6D90|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6D90|1|5|A|2551
6D90|1|5|G|2552
6D90|1|5|A|2553
6D90|1|5|U|2554
6D90|1|5|G|2555
*
6D90|1|5|C|2572
6D90|1|5|A|2573
6D90|1|5|G|2574
6D90|1|5|U|2575
*
6D90|1|5|A|2757
6D90|1|5|G|2758
6D90|1|5|G|2759
6D90|1|5|G|2760
6D90|1|5|U|2761
6D90|1|5|G|2762
6D90|1|5|U|2763
6D90|1|5|A|2764
6D90|1|5|A|2765
6D90|1|5|A|2766
6D90|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

eL27