J3_6D90_029

3D structure

PDB id

6D90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6D90|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6D90_029 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1383

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6D90|1|2|A|40
6D90|1|2|G|41
6D90|1|2|A|42
6D90|1|2|U|43
6D90|1|2|U|44
6D90|1|2|A|45
6D90|1|2|A|46
6D90|1|2|G|47
*
6D90|1|2|C|479
6D90|1|2|G|480
6D90|1|2|C|481
6D90|1|2|G|482
6D90|1|2|C|483
6D90|1|2|A|484
6D90|1|2|A|485
6D90|1|2|A|486
6D90|1|2|U|487
*
6D90|1|2|A|512
6D90|1|2|G|513
6D90|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain KK

uS4

Chain YY

uS12